Publications | Kemal Eren

Stuart Berg, Dominik Kutra, Thorben Kroeger, Christoph N. Straehle, Bernhard X. Kausler, Carsten Haubold, Martin Schiegg, Janez Ales, Thorsten Beier, Markus Rudy, Kemal Eren, Jaime I Cervantes, Buote Xu, Fynn Beuttenmueller, Adrian Wolny, Chong Zhang, Ullrich Koethe, Fred A. Hamprecht. ilastik: interactive machine learning for (bio)image analysis. Nature Methods, 2019.

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Venkatesh Kumar, Thomas Vollbrecht, Mark Chernyshev, Sanjay Mohan, Brian Hanst, Nicholas Bavafa, Antonia Lorenzo, Nikesh Kumar, Robert Ketteringham, Kemal Eren, Michael Golden, Michelli F Oliveira, Ben Murrell. Long Read Amplicon Denoising. Nucleic Acids Research, 2019.

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Kemal Eren, Steven Weaver, Robert Ketteringham, Morné Valentyn, Melissa Laird Smith, Venkatesh Kumar, Sanjay Mohan, Sergei L Kosakovsky Pond, Ben Murrell. Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons. bioRxiv, 2017.

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Kemal Eren, Ben Murrell. RIFRAF: a frame-resolving consensus algorithm. bioRxiv, 2017.

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Elise Landais, Ben Murrell, Bryan Briney, Sasha Murrell, Kimmo Rantalainen, Zachary T. Berndsen, Alejandra Ramos, Lalinda Wickramasinghe, Melissa Laird Smith, Kemal Eren, Natalia de Val, Mengyu Wu, Audrey Cappelletti, Jeffrey Umotoy, Yolanda Lie, Terri Wrin, Paul Algate, Po-Ying Chan-Hui, Pascal Poignard. HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. Immunity, 2017.

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Marina Caskey, Till Schoofs, Henning Gruell, Allison Settler, Theodora Karagounis, Edward F Kreider, Ben Murrell, Nico Pfeifer, Lilian Nogueira, Thiago Y Oliveira, Gerald H Learn, Yehuda Z Cohen, Clara Lehmann, Daniel Gillor, Irina Shimeliovich, Cecilia Unson-O’Brien, Daniela Weiland, Alexander Robles, Tim Kümmerle, Christoph Wyen, Rebeka Levin, Maggi Witmer-Pack, Kemal Eren, Caroline Ignacio, Szilard Kiss, Anthony P West Jr, Hugo Mouquet, Barry S Zingman, Roy M Gulick, Tibor Keler, Pamela J Bjorkman, Michael S Seaman, Beatrice H Hahn, Gerd Fätkenheuer, Sarah J Schlesinger, Michel C Nussenzweig, Florian Klein. Antibody 10-1074 suppresses viremia in HIV-1-infected individuals. Nature Medicine, 2017.

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Melissa Laird Smith, Ben Murrell, Kemal Eren, Caroline Ignacio, Elise Landais, Steven Weaver, Pham Phung, Colleen Ludka, Lance Hepler, Gemma Caballero, Tristan Pollner, Yan Guo, Douglas Richman, The IAVI Protocol C Investigators & The IAVI African HIV Research Network, Pascal Poignard, Ellen E. Paxinos, Sergei L. Kosakovsky Pond, Davey M. Smith. Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples . Virus Evolution, 2016.

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Daniel T. MacLeod, Nancy M. Choi, Bryan Briney, Fernando Garces, Lorena S. Ver, Elise Landais, Ben Murrel, Terri Wrin, William Kilembe, Chi-Hui Liang, Alejandra Ramos, Chaoran B. Bian, Lalinda Wickramasinghe, Leopold Kong, Kemal Eren, Chung-Yi Wu, Chi-Huey Wong. Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch. Immunity, 2016.

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Ben Murrell, Steven Weaver, Martin D. Smith, Joel O. Wertheim, Sasha Murrell, Anthony Aylward, Kemal Eren, Tristan Pollner, Darren P. Martin, Davey M. Smith, Konrad Scheffler, Sergei L. Kosakovsky Pond. Gene-Wide Identification of Episodic Selection. Molecular Biology and Evolution, 2016.

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Mehmet Deveci, Onur Küçüktunç, Kemal Eren, Doruk Bozdağ, Kamer Kaya, Ümit V. Çatalyürek. Querying Co-regulated Genes on Diverse Gene Expression Datasets Via Biclustering. Microarray Data Analysis, 2015.

Kemal Eren, Mehmet Deveci, Onur Küçüktunç, Ümit V. Çatalyürek. A comparative analysis of biclustering algorithms for gene expression data. Briefings in Bioinformatics, 2012.

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